IASL-BNER
IASL-BNER targets the BNER problems of protein-protein interaction extraction (PPIE) and biomedical event extraction (BEE) tasks. It takes the advantages of the interpertability of knowledge-based approach and the learning ability of logistic regression model. Results showed that BNER outperformed several open source BNER systems and state-of-the-art method in 12 different corpora including 5 PPIE corpora and 5 BEE corpora.
Annotation Guideline
You can download our Annotation Guideline.
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Ensembled Biomedical Entity Dataset (EBED)
You can download our EBED.
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Revised JNLPBA
You can download our Revised JNLPBA corpus.
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Entity (Concept) Knowledge Base
You can download our Entity (Concept) Knowledge Base.
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API
API page tells you how to use our BNER system by calling IASL BNER web service.
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System architecture
We introduce the framework of IASL BNER.
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